Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs1882543 chr12:107067160 A/G 5.07E-5 134 28.67 42.02 45.93 KM Plot
TGCT rs189441 chr17:39367743 A/C 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs1922432 chr12:107077232 G/A 7.21E-5 129 46.77 45.47 28.67 KM Plot
TGCT rs1922433 chr12:107077172 A/G 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs1922435 chr12:107082455 A/G 0.000103 134 42.18 45.83 28.8 KM Plot
TGCT rs1922436 chr12:107065258 A/G 0.000103 134 42.27 45.47 28.8 KM Plot
TGCT rs1922438 chr12:107085171 C/G 0.000103 134 42.27 45.47 28.8 KM Plot
TGCT rs1930960 chr10:27564826 G/C 8.0E-7 131 42.18 46.07 20.6 KM Plot
TGCT rs1959477 chr14:71034216 A/G 1.43E-5 133 39.38 65.47 21.43 KM Plot
TGCT rs1968916 chr2:99861530 C/T 0.000122 133 42.18 66.9 30.55 KM Plot
TGCT rs1969755 chr6:15221395 G/A 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs199724778 chr17:39345144 CAA/C 7.48E-7 132 13.17 46.03 43.68 KM Plot
TGCT rs200498927 chr16:27801022 T/TGGAC 0.000168 128 46.77 33.05 17.87 KM Plot
TGCT rs200805418 chr6:42551730 ATTTT/A 5.0E-8 128 20.6 50.8 38.2 KM Plot
TGCT rs200827597 chr16:67666028 T/TTCAGAAA 0 133 46.07 24.1 0.57 KM Plot